J4_1VX3_001

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUCC*GGCCGGGCCAC*GAGGGGCCACGCGCGCGUC*GACGGCGGAGCGA

Length

48 nucleotides

Bulged bases

1VX3|1|5|C|1237, 1VX3|1|5|G|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|U|980
1VX3|1|5|C|981
1VX3|1|5|U|982
1VX3|1|5|C|983
1VX3|1|5|C|984
*
1VX3|1|5|G|1069
1VX3|1|5|G|1070
1VX3|1|5|C|1071
1VX3|1|5|C|1072
1VX3|1|5|G|1073
1VX3|1|5|G|1074
1VX3|1|5|G|1075
1VX3|1|5|C|1076
1VX3|1|5|C|1077
1VX3|1|5|A|1078
1VX3|1|5|C|1079
*
1VX3|1|5|G|1221
1VX3|1|5|A|1222
1VX3|1|5|G|1232
1VX3|1|5|G|1233
1VX3|1|5|G|1234
1VX3|1|5|G|1235
1VX3|1|5|C|1236
1VX3|1|5|C|1237
1VX3|1|5|A|1238
1VX3|1|5|C|1239
1VX3|1|5|G|1240
1VX3|1|5|C|1241
1VX3|1|5|G|1242
1VX3|1|5|C|1243
1VX3|1|5|G|1244
1VX3|1|5|C|1245
1VX3|1|5|G|1246
1VX3|1|5|U|1247
1VX3|1|5|C|1248
*
1VX3|1|5|G|1262
1VX3|1|5|A|1263
1VX3|1|5|C|1264
1VX3|1|5|G|1265
1VX3|1|5|G|1266
1VX3|1|5|C|1267
1VX3|1|5|G|1268
1VX3|1|5|G|1269
1VX3|1|5|A|1270
1VX3|1|5|G|1271
1VX3|1|5|C|1272
1VX3|1|5|G|1273
1VX3|1|5|A|1274

Current chains

Chain 5

28S ribosomal RNA

Nearby chains