J4_1VX3_002

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGUCAG*UCCG*CGGGCCGUAC

Length

25 nucleotides

Bulged bases

1VX3|1|5|U|2408, 1VX3|1|5|U|2436, 1VX3|1|5|C|2437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|2406
1VX3|1|5|G|2407
1VX3|1|5|U|2408
1VX3|1|5|U|2409
1VX3|1|5|C|2410
*
1VX3|1|5|G|2434
1VX3|1|5|G|2435
1VX3|1|5|U|2436
1VX3|1|5|C|2437
1VX3|1|5|A|2438
1VX3|1|5|G|2439
*
1VX3|1|5|U|2538
1VX3|1|5|C|2539
1VX3|1|5|C|2540
1VX3|1|5|G|2541
*
1VX3|1|5|C|2775
1VX3|1|5|G|2776
1VX3|1|5|G|2777
1VX3|1|5|G|2778
1VX3|1|5|C|2779
1VX3|1|5|C|2780
1VX3|1|5|G|2781
1VX3|1|5|U|2782
1VX3|1|5|A|2783
1VX3|1|5|C|2784

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA