J4_1VY4_024

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1VY4_024 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0699

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

1VY4|1|DA|C|297
1VY4|1|DA|G|298
1VY4|1|DA|A|299
1VY4|1|DA|A|300
1VY4|1|DA|G|301
*
1VY4|1|DA|C|316
1VY4|1|DA|G|317
1VY4|1|DA|C|318
1VY4|1|DA|C|319
*
1VY4|1|DA|G|323
1VY4|1|DA|A|324
1VY4|1|DA|G|325
*
1VY4|1|DA|C|337
1VY4|1|DA|G|338
1VY4|1|DA|U|339
1VY4|1|DA|A|340
1VY4|1|DA|G|341

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DY

50S ribosomal protein L24