J4_1W2B_006

3D structure

PDB id

1W2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Trigger Factor ribosome binding domain in complex with 50S

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CG*UC*GG*CG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1W2B_006 not in the Motif Atlas

Homologous match to J4_4V9F_006

Geometric discrepancy: 0.1007

The information below is about J4_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

1W2B|1|0|C|1551
1W2B|1|0|G|1552
*
1W2B|1|0|U|1569
1W2B|1|0|C|1570
*
1W2B|1|0|G|1627
1W2B|1|0|G|1628
*
1W2B|1|0|C|1633
1W2B|1|0|G|1634

Current chains

Chain 0

23S RRNA

Nearby chains

Chain O

50S RIBOSOMAL PROTEIN L19E