Loop J4_1XMO

3D structure

PDB id: 1XMO (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal Structure of mnm5U34t6A37-tRNALysUUU Complexed with AAG-mRNA in the Decoding Center
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å

Loop

Sequence: CUGG*CUUGGAGGAAGAAGCCCUUCGGGGUGUAAACUCCUGAAC*GGUAAUAG*CGAG
Length: 55 nucleotides
Bulged bases: 1XMO|1|A|A|408, 1XMO|1|A|A|412, 1XMO|1|A|G|413, 1XMO|1|A|A|414, 1XMO|1|A|A|415, 1XMO|1|A|G|416, 1XMO|1|A|C|417, 1XMO|1|A|U|420, 1XMO|1|A|U|421, 1XMO|1|A|C|422, 1XMO|1|A|U|429, 1XMO|1|A|C|433, 1XMO|1|A|U|434, 1XMO|1|A|C|435
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1XMO|1|A|C|36
1XMO|1|A|U|37
1XMO|1|A|G|38
1XMO|1|A|G|39
*
1XMO|1|A|C|403
1XMO|1|A|U|404
1XMO|1|A|U|405
1XMO|1|A|G|406
1XMO|1|A|G|407
1XMO|1|A|A|408
1XMO|1|A|G|409
1XMO|1|A|G|410
1XMO|1|A|A|411
1XMO|1|A|A|412
1XMO|1|A|G|413
1XMO|1|A|A|414
1XMO|1|A|A|415
1XMO|1|A|G|416
1XMO|1|A|C|417
1XMO|1|A|C|418
1XMO|1|A|C|419
1XMO|1|A|U|420
1XMO|1|A|U|421
1XMO|1|A|C|422
1XMO|1|A|G|423
1XMO|1|A|G|424
1XMO|1|A|G|425
1XMO|1|A|G|426
1XMO|1|A|U|427
1XMO|1|A|G|428
1XMO|1|A|U|429
1XMO|1|A|A|430
1XMO|1|A|A|431
1XMO|1|A|A|432
1XMO|1|A|C|433
1XMO|1|A|U|434
1XMO|1|A|C|435
1XMO|1|A|C|436
1XMO|1|A|U|437
1XMO|1|A|G|438
1XMO|1|A|A|439
1XMO|1|A|A|440
1XMO|1|A|C|442
*
1XMO|1|A|G|492
1XMO|1|A|G|494
1XMO|1|A|U|495
1XMO|1|A|A|496
1XMO|1|A|A|497
1XMO|1|A|U|498
1XMO|1|A|A|499
1XMO|1|A|G|500
*
1XMO|1|A|C|545
1XMO|1|A|G|546
1XMO|1|A|A|547
1XMO|1|A|G|548

Current chains

Chain A: 16S ribosomal RNA

Nearby chains

Chain C: 30S ribosomal protein S3
Chain D: 30S ribosomal protein S4
Chain L: 30S ribosomal protein S12

J4_1XMO_001