J4_1Y0Q_001

3D structure

PDB id

1Y0Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an active group I ribozyme-product complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UAUU*AAGUAG*CGAAAUGGGGAUU*AGUGAUAUA

Length

32 nucleotides

Bulged bases

1Y0Q|1|A|U|186, 1Y0Q|1|A|A|187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Y0Q|1|A|U|125
1Y0Q|1|A|A|126
1Y0Q|1|A|U|127
1Y0Q|1|A|U|128
*
1Y0Q|1|A|A|137
1Y0Q|1|A|A|138
1Y0Q|1|A|G|139
1Y0Q|1|A|U|140
1Y0Q|1|A|A|141
1Y0Q|1|A|G|142
*
1Y0Q|1|A|C|155
1Y0Q|1|A|G|156
1Y0Q|1|A|A|157
1Y0Q|1|A|A|158
1Y0Q|1|A|A|159
1Y0Q|1|A|U|160
1Y0Q|1|A|G|161
1Y0Q|1|A|G|162
1Y0Q|1|A|G|163
1Y0Q|1|A|G|164
1Y0Q|1|A|A|165
1Y0Q|1|A|U|166
1Y0Q|1|A|U|167
*
1Y0Q|1|A|A|181
1Y0Q|1|A|G|182
1Y0Q|1|A|U|183
1Y0Q|1|A|G|184
1Y0Q|1|A|A|185
1Y0Q|1|A|U|186
1Y0Q|1|A|A|187
1Y0Q|1|A|U|188
1Y0Q|1|A|A|189

Current chains

Chain A

Group I ribozyme

Nearby chains

Chain B

5'-R(*GP*CP*UP*U)-3'