J4_1Y69_002

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CGAGC*GGCGGAG*CGAGUC*GGGCGGCAUUAG

Length

30 nucleotides

Bulged bases

1Y69|1|0|A|638, 1Y69|1|0|A|648, 1Y69|1|0|A|665, 1Y69|1|0|U|666, 1Y69|1|0|U|667, 1Y69|1|0|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Y69|1|0|C|611
1Y69|1|0|G|612
1Y69|1|0|A|613
1Y69|1|0|G|614
1Y69|1|0|C|615
*
1Y69|1|0|G|633
1Y69|1|0|G|634
1Y69|1|0|C|635
1Y69|1|0|G|636
1Y69|1|0|G|637
1Y69|1|0|A|638
1Y69|1|0|G|639
*
1Y69|1|0|C|646
1Y69|1|0|G|647
1Y69|1|0|A|648
1Y69|1|0|G|649
1Y69|1|0|U|650
1Y69|1|0|C|651
*
1Y69|1|0|G|658
1Y69|1|0|G|659
1Y69|1|0|G|660
1Y69|1|0|C|661
1Y69|1|0|G|662
1Y69|1|0|G|663
1Y69|1|0|C|664
1Y69|1|0|A|665
1Y69|1|0|U|666
1Y69|1|0|U|667
1Y69|1|0|A|668
1Y69|1|0|G|669

Current chains

Chain 0

23S ribosomal RNA

Nearby chains