J4_1Y69_005

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

AUG*UUGGUACGCUCAAG*CUCAGACGUAUCGGGAGC*GCGAAGU

Length

42 nucleotides

Bulged bases

1Y69|1|0|U|1459, 1Y69|1|0|C|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Y69|1|0|A|1458
1Y69|1|0|U|1459
1Y69|1|0|G|1460
*
1Y69|1|0|U|1481
1Y69|1|0|U|1482
1Y69|1|0|G|1483
1Y69|1|0|G|1484
1Y69|1|0|U|1485
1Y69|1|0|A|1486
1Y69|1|0|C|1487
1Y69|1|0|G|1488
1Y69|1|0|C|1489
1Y69|1|0|U|1490
1Y69|1|0|C|1491
1Y69|1|0|A|1492
1Y69|1|0|A|1493
1Y69|1|0|G|1494
*
1Y69|1|0|C|1529
1Y69|1|0|U|1530
1Y69|1|0|C|1531
1Y69|1|0|A|1532
1Y69|1|0|G|1533
1Y69|1|0|A|1534
1Y69|1|0|C|1535
1Y69|1|0|G|1536
1Y69|1|0|U|1537
1Y69|1|0|A|1538
1Y69|1|0|U|1539
1Y69|1|0|C|1540
1Y69|1|0|G|1541
1Y69|1|0|G|1542
1Y69|1|0|G|1543
1Y69|1|0|A|1544
1Y69|1|0|G|1545
1Y69|1|0|C|1546
*
1Y69|1|0|G|1557
1Y69|1|0|C|1558
1Y69|1|0|G|1559
1Y69|1|0|A|1560
1Y69|1|0|A|1561
1Y69|1|0|G|1562
1Y69|1|0|U|1563

Current chains

Chain 0

23S ribosomal RNA

Nearby chains