J4_1YIJ_002

3D structure

PDB id

1YIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Telithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

ACGAAG*CGUG*CAG*CGUACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_1YIJ_002 not in the Motif Atlas

Homologous match to J4_4V9F_002

Geometric discrepancy: 0.0271

The information below is about J4_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_11418.1

Basepair signature

cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

1YIJ|1|0|A|302
1YIJ|1|0|C|303
1YIJ|1|0|G|304
1YIJ|1|0|A|305
1YIJ|1|0|A|306
1YIJ|1|0|G|307
*
1YIJ|1|0|C|323
1YIJ|1|0|G|324
1YIJ|1|0|U|325
1YIJ|1|0|G|326
*
1YIJ|1|0|C|330
1YIJ|1|0|A|331
1YIJ|1|0|G|332
*
1YIJ|1|0|C|344
1YIJ|1|0|G|345
1YIJ|1|0|U|346
1YIJ|1|0|A|347
1YIJ|1|0|C|348
1YIJ|1|0|U|349

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4E

Chain T

50S ribosomal protein L24P