J4_22TU_002

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGGUCU*GAUUCU*AGGUCC*GA

Length

21 nucleotides

Bulged bases

22TU|1|C4|U|46, 22TU|1|C4|C|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

22TU|1|C4|U|7
22TU|1|C4|U|8
22TU|1|C4|G|9
22TU|1|C4|G|10
22TU|1|C4|U|11
22TU|1|C4|C|12
22TU|1|C4|U|13
*
22TU|1|C4|G|22
22TU|1|C4|A|23
22TU|1|C4|U|24
22TU|1|C4|U|25
22TU|1|C4|C|26
22TU|1|C4|U|27
*
22TU|1|C4|A|43
22TU|1|C4|G|44
22TU|1|C4|G|45
22TU|1|C4|U|46
22TU|1|C4|C|47
22TU|1|C4|C|48
*
22TU|1|C4|G|64
22TU|1|C4|A|65

Current chains

Chain C4

tRNA

Nearby chains

Chain Lo

60S ribosomal protein L36a