J4_22TU_004

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

22TU|1|L5|A|218, 22TU|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

22TU|1|L5|C|196
22TU|1|L5|A|197
22TU|1|L5|A|198
22TU|1|L5|G|199
*
22TU|1|L5|C|215
22TU|1|L5|C|216
22TU|1|L5|C|217
22TU|1|L5|A|218
22TU|1|L5|G|219
22TU|1|L5|C|220
22TU|1|L5|C|221
22TU|1|L5|C|222
*
22TU|1|L5|G|226
22TU|1|L5|A|227
22TU|1|L5|C|228
*
22TU|1|L5|G|240
22TU|1|L5|G|241
22TU|1|L5|U|242
22TU|1|L5|A|243
22TU|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26