J4_28UH_012
3D structure
- PDB id
- 28UH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.06 Å
Loop
- Sequence
- CU(2MG)*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 28UH|1|a|U|1971
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_28UH_012 not in the Motif Atlas
- Homologous match to J4_8B0X_012
- Geometric discrepancy: 0.4047
- The information below is about J4_8B0X_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.3
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
28UH|1|a|C|1833
28UH|1|a|U|1834
28UH|1|a|2MG|1835
*
28UH|1|a|C|1905
28UH|1|a|G|1906
*
28UH|1|a|C|1924
28UH|1|a|C|1925
28UH|1|a|U|1926
28UH|1|a|A|1927
28UH|1|a|A|1928
28UH|1|a|G|1929
28UH|1|a|G|1930
28UH|1|a|U|1931
28UH|1|a|A|1932
28UH|1|a|G|1933
*
28UH|1|a|C|1967
28UH|1|a|G|1968
28UH|1|a|A|1969
28UH|1|a|A|1970
28UH|1|a|U|1971
28UH|1|a|G|1972
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: