J4_28UM_008

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

28UM|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28UM|1|a|G|1310
28UM|1|a|G|1311
28UM|1|a|U|1312
28UM|1|a|U|1313
28UM|1|a|C|1314
*
28UM|1|a|G|1338
28UM|1|a|G|1339
28UM|1|a|U|1340
28UM|1|a|G|1341
28UM|1|a|A|1342
28UM|1|a|G|1343
*
28UM|1|a|C|1404
28UM|1|a|U|1405
*
28UM|1|a|A|1597
28UM|1|a|A|1598
28UM|1|a|U|1599
28UM|1|a|C|1600
28UM|1|a|G|1601
28UM|1|a|U|1602
28UM|1|a|A|1603
28UM|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23