J4_2D3O_002

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

2D3O|1|0|G|1284, 2D3O|1|0|A|1285, 2D3O|1|0|U|1286, 2D3O|1|0|A|1287, 2D3O|1|0|C|1663, 2D3O|1|0|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2D3O_002 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.2164

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

2D3O|1|0|C|1283
2D3O|1|0|G|1284
2D3O|1|0|A|1285
2D3O|1|0|U|1286
2D3O|1|0|A|1287
2D3O|1|0|A|1288
2D3O|1|0|A|1289
*
2D3O|1|0|U|1307
2D3O|1|0|C|1308
*
2D3O|1|0|G|1662
2D3O|1|0|C|1663
2D3O|1|0|G|1664
2D3O|1|0|C|1665
*
2D3O|1|0|G|1992
2D3O|1|0|G|1993

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains