J4_2D3O_010

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AUG*UUGGUAC*GUAUCGGGAG*CGAAGU

Length

26 nucleotides

Bulged bases

2D3O|1|0|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2D3O|1|0|A|1458
2D3O|1|0|U|1459
2D3O|1|0|G|1460
*
2D3O|1|0|U|1481
2D3O|1|0|U|1482
2D3O|1|0|G|1483
2D3O|1|0|G|1484
2D3O|1|0|U|1485
2D3O|1|0|A|1486
2D3O|1|0|C|1487
*
2D3O|1|0|G|1536
2D3O|1|0|U|1537
2D3O|1|0|A|1538
2D3O|1|0|U|1539
2D3O|1|0|C|1540
2D3O|1|0|G|1541
2D3O|1|0|G|1542
2D3O|1|0|G|1543
2D3O|1|0|A|1544
2D3O|1|0|G|1545
*
2D3O|1|0|C|1558
2D3O|1|0|G|1559
2D3O|1|0|A|1560
2D3O|1|0|A|1561
2D3O|1|0|G|1562
2D3O|1|0|U|1563

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains