J4_2D3O_011

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GCAAUCUCA*UC*GCGCAGUGAAUAGG*CGC

Length

28 nucleotides

Bulged bases

2D3O|1|0|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2D3O|1|0|G|1691
2D3O|1|0|C|1692
2D3O|1|0|A|1693
2D3O|1|0|A|1694
2D3O|1|0|U|1695
2D3O|1|0|C|1696
2D3O|1|0|U|1697
2D3O|1|0|C|1698
2D3O|1|0|A|1699
*
2D3O|1|0|U|1723
2D3O|1|0|C|1724
*
2D3O|1|0|G|1742
2D3O|1|0|C|1743
2D3O|1|0|G|1744
2D3O|1|0|C|1745
2D3O|1|0|A|1746
2D3O|1|0|G|1747
2D3O|1|0|U|1748
2D3O|1|0|G|1749
2D3O|1|0|A|1750
2D3O|1|0|A|1751
2D3O|1|0|U|1752
2D3O|1|0|A|1753
2D3O|1|0|G|1754
2D3O|1|0|G|1755
*
2D3O|1|0|C|1971
2D3O|1|0|G|1972
2D3O|1|0|C|1973

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains