J4_2DU5_001
3D structure
- PDB id
- 2DU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAOpal and O-phosphoserine ('opal complex')
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUGG*CGG*CUUUACC*GCC
- Length
- 18 nucleotides
- Bulged bases
- 2DU5|1|D|U|908, 2DU5|1|D|U|943, 2DU5|1|D|U|944, 2DU5|1|D|U|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
2DU5|1|D|G|906
2DU5|1|D|G|907
2DU5|1|D|U|908
2DU5|1|D|G|909
2DU5|1|D|G|910
*
2DU5|1|D|C|924
2DU5|1|D|G|925
2DU5|1|D|G|926
*
2DU5|1|D|C|942
2DU5|1|D|U|943
2DU5|1|D|U|944
2DU5|1|D|U|945
2DU5|1|D|A|946
2DU5|1|D|C|947
2DU5|1|D|C|948
*
2DU5|1|D|G|964
2DU5|1|D|C|965
2DU5|1|D|C|966
Current chains
- Chain D
- tRNA
Nearby chains
- Chain A
- O-phosphoseryl-tRNA synthetase
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