J4_2DU5_001

3D structure

PDB id

2DU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAOpal and O-phosphoserine ('opal complex')

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUGG*CGG*CUUUACC*GCC

Length

18 nucleotides

Bulged bases

2DU5|1|D|U|908, 2DU5|1|D|U|943, 2DU5|1|D|U|944, 2DU5|1|D|U|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2DU5|1|D|G|906
2DU5|1|D|G|907
2DU5|1|D|U|908
2DU5|1|D|G|909
2DU5|1|D|G|910
*
2DU5|1|D|C|924
2DU5|1|D|G|925
2DU5|1|D|G|926
*
2DU5|1|D|C|942
2DU5|1|D|U|943
2DU5|1|D|U|944
2DU5|1|D|U|945
2DU5|1|D|A|946
2DU5|1|D|C|947
2DU5|1|D|C|948
*
2DU5|1|D|G|964
2DU5|1|D|C|965
2DU5|1|D|C|966

Current chains

Chain D

tRNA

Nearby chains

Chain A

O-phosphoseryl-tRNA synthetase