J4_2F4V_001

3D structure

PDB id

2F4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosome + designer antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAGUAACG*UCC*GGUAG*CC

Length

18 nucleotides

Bulged bases

2F4V|1|A|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2F4V|1|A|G|115
2F4V|1|A|A|116
2F4V|1|A|G|117
2F4V|1|A|U|118
2F4V|1|A|A|119
2F4V|1|A|A|120
2F4V|1|A|C|121
2F4V|1|A|G|122
*
2F4V|1|A|U|239
2F4V|1|A|C|240
2F4V|1|A|C|241
*
2F4V|1|A|G|285
2F4V|1|A|G|286
2F4V|1|A|U|287
2F4V|1|A|A|288
2F4V|1|A|G|289
*
2F4V|1|A|C|311
2F4V|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17