3D structure

PDB id
2HHH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of kasugamycin bound to the 30S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.35 Å

Loop

Sequence
CGUAAAGGG*CGAAAG*CCCUAAACGAUG*CCG
Length
30 nucleotides
Bulged bases
2HHH|1|A|A|556, 2HHH|1|A|G|560, 2HHH|1|A|A|799
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

2HHH|1|A|C|553
2HHH|1|A|G|554
2HHH|1|A|U|555
2HHH|1|A|A|556
2HHH|1|A|A|557
2HHH|1|A|A|558
2HHH|1|A|G|559
2HHH|1|A|G|560
2HHH|1|A|G|561
*
2HHH|1|A|C|748
2HHH|1|A|G|749
2HHH|1|A|A|750
2HHH|1|A|A|751
2HHH|1|A|A|752
2HHH|1|A|G|753
*
2HHH|1|A|C|794
2HHH|1|A|C|795
2HHH|1|A|C|796
2HHH|1|A|U|797
2HHH|1|A|A|798
2HHH|1|A|A|799
2HHH|1|A|A|800
2HHH|1|A|C|801
2HHH|1|A|G|802
2HHH|1|A|A|803
2HHH|1|A|U|804
2HHH|1|A|G|805
*
2HHH|1|A|C|857
2HHH|1|A|C|858
2HHH|1|A|G|859

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain E
30S ribosomal protein S5
Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.4067 s