J4_2O44_001

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2O44_001 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.1543

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

2O44|1|A|C|308
2O44|1|A|G|309
2O44|1|A|A|310
2O44|1|A|A|311
2O44|1|A|G|312
*
2O44|1|A|C|327
2O44|1|A|A|328
2O44|1|A|C|329
2O44|1|A|C|330
*
2O44|1|A|G|334
2O44|1|A|A|335
2O44|1|A|A|336
*
2O44|1|A|U|348
2O44|1|A|G|349
2O44|1|A|U|350
2O44|1|A|A|351
2O44|1|A|G|352

Current chains

Chain A

23S rRNA

Nearby chains