J4_2O44_002

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAGC*GGCGGAG*CGAGUC*GGGCGGCAUUAG

Length

30 nucleotides

Bulged bases

2O44|1|A|A|638, 2O44|1|A|A|648, 2O44|1|A|A|665, 2O44|1|A|U|666, 2O44|1|A|U|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O44|1|A|C|611
2O44|1|A|G|612
2O44|1|A|A|613
2O44|1|A|G|614
2O44|1|A|C|615
*
2O44|1|A|G|633
2O44|1|A|G|634
2O44|1|A|C|635
2O44|1|A|G|636
2O44|1|A|G|637
2O44|1|A|A|638
2O44|1|A|G|639
*
2O44|1|A|C|646
2O44|1|A|G|647
2O44|1|A|A|648
2O44|1|A|G|649
2O44|1|A|U|650
2O44|1|A|C|651
*
2O44|1|A|G|658
2O44|1|A|G|659
2O44|1|A|G|660
2O44|1|A|C|661
2O44|1|A|G|662
2O44|1|A|G|663
2O44|1|A|C|664
2O44|1|A|A|665
2O44|1|A|U|666
2O44|1|A|U|667
2O44|1|A|A|668
2O44|1|A|G|669

Current chains

Chain A

23S rRNA

Nearby chains