J4_2O44_004

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUUC*GGAAAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

2O44|1|A|A|1354, 2O44|1|A|A|1355, 2O44|1|A|U|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2O44_004 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.2052

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

2O44|1|A|G|1323
2O44|1|A|G|1324
2O44|1|A|U|1325
2O44|1|A|U|1326
2O44|1|A|C|1327
*
2O44|1|A|G|1351
2O44|1|A|G|1352
2O44|1|A|A|1353
2O44|1|A|A|1354
2O44|1|A|A|1355
2O44|1|A|G|1356
*
2O44|1|A|C|1417
2O44|1|A|C|1418
*
2O44|1|A|G|1613
2O44|1|A|C|1614
2O44|1|A|C|1615
2O44|1|A|C|1616
2O44|1|A|G|1617
2O44|1|A|U|1618
2O44|1|A|A|1619
2O44|1|A|C|1620

Current chains

Chain A

23S rRNA

Nearby chains