J4_2O44_006

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GC*GUGAACC*GAUCAAC

Length

18 nucleotides

Bulged bases

2O44|1|A|U|2369, 2O44|1|A|U|2402, 2O44|1|A|A|2405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O44|1|A|G|2261
2O44|1|A|C|2262
*
2O44|1|A|G|2304
2O44|1|A|C|2305
*
2O44|1|A|G|2368
2O44|1|A|U|2369
2O44|1|A|G|2370
2O44|1|A|A|2371
2O44|1|A|A|2372
2O44|1|A|C|2373
2O44|1|A|C|2374
*
2O44|1|A|G|2400
2O44|1|A|A|2401
2O44|1|A|U|2402
2O44|1|A|C|2403
2O44|1|A|A|2404
2O44|1|A|A|2405
2O44|1|A|C|2406

Current chains

Chain A

23S rRNA

Nearby chains