J4_2O45_003

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAUAAA*UCG*CGCGC*GG

Length

17 nucleotides

Bulged bases

2O45|1|A|G|1284, 2O45|1|A|A|1285, 2O45|1|A|U|1286, 2O45|1|A|A|1288, 2O45|1|A|C|1663, 2O45|1|A|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O45|1|A|C|1283
2O45|1|A|G|1284
2O45|1|A|A|1285
2O45|1|A|U|1286
2O45|1|A|A|1287
2O45|1|A|A|1288
2O45|1|A|A|1289
*
2O45|1|A|U|1307
2O45|1|A|C|1308
2O45|1|A|G|1309
*
2O45|1|A|C|1661
2O45|1|A|G|1662
2O45|1|A|C|1663
2O45|1|A|G|1664
2O45|1|A|C|1665
*
2O45|1|A|G|1992
2O45|1|A|G|1993

Current chains

Chain A

23S rRNA

Nearby chains