J4_2O45_004

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUUCC*GGGAAAG*CC*GCCCGUAC

Length

23 nucleotides

Bulged bases

2O45|1|A|U|1325, 2O45|1|A|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O45|1|A|G|1323
2O45|1|A|G|1324
2O45|1|A|U|1325
2O45|1|A|U|1326
2O45|1|A|C|1327
2O45|1|A|C|1328
*
2O45|1|A|G|1350
2O45|1|A|G|1351
2O45|1|A|G|1352
2O45|1|A|A|1353
2O45|1|A|A|1354
2O45|1|A|A|1355
2O45|1|A|G|1356
*
2O45|1|A|C|1417
2O45|1|A|C|1418
*
2O45|1|A|G|1613
2O45|1|A|C|1614
2O45|1|A|C|1615
2O45|1|A|C|1616
2O45|1|A|G|1617
2O45|1|A|U|1618
2O45|1|A|A|1619
2O45|1|A|C|1620

Current chains

Chain A

23S rRNA

Nearby chains