J4_2O45_007

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

2O45|1|A|U|1909, 2O45|1|A|A|1910, 2O45|1|A|A|1911, 2O45|1|A|G|1912, 2O45|1|A|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O45|1|A|C|1825
2O45|1|A|U|1826
2O45|1|A|G|1827
*
2O45|1|A|C|1888
2O45|1|A|G|1889
*
2O45|1|A|C|1907
2O45|1|A|C|1908
2O45|1|A|U|1909
2O45|1|A|A|1910
2O45|1|A|A|1911
2O45|1|A|G|1912
2O45|1|A|G|1913
2O45|1|A|U|1914
2O45|1|A|A|1915
2O45|1|A|G|1916
*
2O45|1|A|C|1950
2O45|1|A|G|1951
2O45|1|A|A|1952
2O45|1|A|A|1953
2O45|1|A|A|1954
2O45|1|A|G|1955

Current chains

Chain A

23S rRNA

Nearby chains