J4_2O45_008

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAAAGG*CUUGACU*AGGG*CGG

Length

20 nucleotides

Bulged bases

2O45|1|A|A|2265, 2O45|1|A|A|2267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O45|1|A|C|2264
2O45|1|A|A|2265
2O45|1|A|A|2266
2O45|1|A|A|2267
2O45|1|A|G|2268
2O45|1|A|G|2269
*
2O45|1|A|C|2321
2O45|1|A|U|2322
2O45|1|A|U|2323
2O45|1|A|G|2324
2O45|1|A|A|2325
2O45|1|A|C|2326
2O45|1|A|U|2327
*
2O45|1|A|A|2348
2O45|1|A|G|2349
2O45|1|A|G|2350
2O45|1|A|G|2351
*
2O45|1|A|C|2360
2O45|1|A|G|2361
2O45|1|A|G|2362

Current chains

Chain A

23S rRNA

Nearby chains