J4_2O45_011

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAGC*GGCGGAG*CGAGU*GGCGGCAUUAG

Length

28 nucleotides

Bulged bases

2O45|1|A|A|613, 2O45|1|A|A|648, 2O45|1|A|C|664, 2O45|1|A|A|665, 2O45|1|A|U|666, 2O45|1|A|U|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O45|1|A|C|611
2O45|1|A|G|612
2O45|1|A|A|613
2O45|1|A|G|614
2O45|1|A|C|615
*
2O45|1|A|G|633
2O45|1|A|G|634
2O45|1|A|C|635
2O45|1|A|G|636
2O45|1|A|G|637
2O45|1|A|A|638
2O45|1|A|G|639
*
2O45|1|A|C|646
2O45|1|A|G|647
2O45|1|A|A|648
2O45|1|A|G|649
2O45|1|A|U|650
*
2O45|1|A|G|659
2O45|1|A|G|660
2O45|1|A|C|661
2O45|1|A|G|662
2O45|1|A|G|663
2O45|1|A|C|664
2O45|1|A|A|665
2O45|1|A|U|666
2O45|1|A|U|667
2O45|1|A|A|668
2O45|1|A|G|669

Current chains

Chain A

23S rRNA

Nearby chains