J4_2O45_014

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGAACUUUGCAAUCUCA*UC*GCGCAGUGAAUAGG*CGCUGUC

Length

40 nucleotides

Bulged bases

2O45|1|A|A|1686, 2O45|1|A|C|1692, 2O45|1|A|C|1745, 2O45|1|A|A|1746, 2O45|1|A|G|1749, 2O45|1|A|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2O45|1|A|G|1683
2O45|1|A|G|1684
2O45|1|A|A|1685
2O45|1|A|A|1686
2O45|1|A|C|1687
2O45|1|A|U|1688
2O45|1|A|U|1689
2O45|1|A|U|1690
2O45|1|A|G|1691
2O45|1|A|C|1692
2O45|1|A|A|1693
2O45|1|A|A|1694
2O45|1|A|U|1695
2O45|1|A|C|1696
2O45|1|A|U|1697
2O45|1|A|C|1698
2O45|1|A|A|1699
*
2O45|1|A|U|1723
2O45|1|A|C|1724
*
2O45|1|A|G|1742
2O45|1|A|C|1743
2O45|1|A|G|1744
2O45|1|A|C|1745
2O45|1|A|A|1746
2O45|1|A|G|1747
2O45|1|A|U|1748
2O45|1|A|G|1749
2O45|1|A|A|1750
2O45|1|A|A|1751
2O45|1|A|U|1752
2O45|1|A|A|1753
2O45|1|A|G|1754
2O45|1|A|G|1755
*
2O45|1|A|C|1971
2O45|1|A|G|1972
2O45|1|A|C|1973
2O45|1|A|U|1974
2O45|1|A|G|1975
2O45|1|A|U|1976
2O45|1|A|C|1977

Current chains

Chain A

23S rRNA

Nearby chains