J4_2OTJ_002
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- ACGAAG*CGUG*CAG*CGUACU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_2OTJ_002 not in the Motif Atlas
- Homologous match to J4_4V9F_002
- Geometric discrepancy: 0.0359
- The information below is about J4_4V9F_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_11418.1
- Basepair signature
- cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
2OTJ|1|0|A|302
2OTJ|1|0|C|303
2OTJ|1|0|G|304
2OTJ|1|0|A|305
2OTJ|1|0|A|306
2OTJ|1|0|G|307
*
2OTJ|1|0|C|323
2OTJ|1|0|G|324
2OTJ|1|0|U|325
2OTJ|1|0|G|326
*
2OTJ|1|0|C|330
2OTJ|1|0|A|331
2OTJ|1|0|G|332
*
2OTJ|1|0|C|344
2OTJ|1|0|G|345
2OTJ|1|0|U|346
2OTJ|1|0|A|347
2OTJ|1|0|C|348
2OTJ|1|0|U|349
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4P
- Chain T
- 50S ribosomal protein L24P
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