J4_2OTL_002

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

ACGAAG*CGUG*CAG*CGUACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2OTL_002 not in the Motif Atlas

Homologous match to J4_4V9F_002

Geometric discrepancy: 0.0365

The information below is about J4_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_11418.1

Basepair signature

cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

2OTL|1|0|A|302
2OTL|1|0|C|303
2OTL|1|0|G|304
2OTL|1|0|A|305
2OTL|1|0|A|306
2OTL|1|0|G|307
*
2OTL|1|0|C|323
2OTL|1|0|G|324
2OTL|1|0|U|325
2OTL|1|0|G|326
*
2OTL|1|0|C|330
2OTL|1|0|A|331
2OTL|1|0|G|332
*
2OTL|1|0|C|344
2OTL|1|0|G|345
2OTL|1|0|U|346
2OTL|1|0|A|347
2OTL|1|0|C|348
2OTL|1|0|U|349

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P