J4_2QA4_009

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAC*GG*CACG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2QA4_009 not in the Motif Atlas

Homologous match to J4_4V9F_010

Geometric discrepancy: 0.1222

The information below is about J4_4V9F_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_28473.1

Basepair signature

cWW-F-F-F-cWW-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

2QA4|1|0|G|2679
2QA4|1|0|A|2680
2QA4|1|0|A|2681
2QA4|1|0|C|2682
*
2QA4|1|0|G|2712
2QA4|1|0|G|2713
*
2QA4|1|0|C|2767
2QA4|1|0|A|2768
2QA4|1|0|C|2769
2QA4|1|0|G|2770
*
2QA4|1|0|C|2804
2QA4|1|0|A|2805
2QA4|1|0|C|2806

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P

Chain K

50S ribosomal protein L14P