J4_2QEX_002

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACGAAG*CGUG*CAG*CGUACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2QEX_002 not in the Motif Atlas

Homologous match to J4_4V9F_002

Geometric discrepancy: 0.0513

The information below is about J4_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_11418.1

Basepair signature

cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

2QEX|1|0|A|302
2QEX|1|0|C|303
2QEX|1|0|G|304
2QEX|1|0|A|305
2QEX|1|0|A|306
2QEX|1|0|G|307
*
2QEX|1|0|C|323
2QEX|1|0|G|324
2QEX|1|0|U|325
2QEX|1|0|G|326
*
2QEX|1|0|C|330
2QEX|1|0|A|331
2QEX|1|0|G|332
*
2QEX|1|0|C|344
2QEX|1|0|G|345
2QEX|1|0|U|346
2QEX|1|0|A|347
2QEX|1|0|C|348
2QEX|1|0|U|349

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P