J4_2ZJP_004

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGUUC*GGAAAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

2ZJP|1|X|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2ZJP_004 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.1038

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

2ZJP|1|X|G|1323
2ZJP|1|X|G|1324
2ZJP|1|X|U|1325
2ZJP|1|X|U|1326
2ZJP|1|X|C|1327
*
2ZJP|1|X|G|1351
2ZJP|1|X|G|1352
2ZJP|1|X|A|1353
2ZJP|1|X|A|1354
2ZJP|1|X|A|1355
2ZJP|1|X|G|1356
*
2ZJP|1|X|C|1417
2ZJP|1|X|C|1418
*
2ZJP|1|X|G|1613
2ZJP|1|X|C|1614
2ZJP|1|X|C|1615
2ZJP|1|X|C|1616
2ZJP|1|X|G|1617
2ZJP|1|X|U|1618
2ZJP|1|X|A|1619
2ZJP|1|X|C|1620

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain Q

50S RIBOSOMAL PROTEIN L23