J4_2ZJP_006

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUG*UU*GGGAG*CGAAGU

Length

16 nucleotides

Bulged bases

2ZJP|1|X|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2ZJP_006 not in the Motif Atlas

Homologous match to J4_7A0S_007

Geometric discrepancy: 0.1164

The information below is about J4_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_91813.1

Basepair signature

cWW-cWW-F-tSH-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

2ZJP|1|X|A|1458
2ZJP|1|X|U|1459
2ZJP|1|X|G|1460
*
2ZJP|1|X|U|1481
2ZJP|1|X|U|1482
*
2ZJP|1|X|G|1541
2ZJP|1|X|G|1542
2ZJP|1|X|G|1543
2ZJP|1|X|A|1544
2ZJP|1|X|G|1545
*
2ZJP|1|X|C|1558
2ZJP|1|X|G|1559
2ZJP|1|X|A|1560
2ZJP|1|X|A|1561
2ZJP|1|X|G|1562
2ZJP|1|X|U|1563

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains