J4_2ZJR_006

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

AUG*UU*GGGAG*CGAAGU

Length

16 nucleotides

Bulged bases

2ZJR|1|X|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2ZJR_006 not in the Motif Atlas

Homologous match to J4_7A0S_007

Geometric discrepancy: 0.1181

The information below is about J4_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_91813.1

Basepair signature

cWW-cWW-F-tSH-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

2ZJR|1|X|A|1458
2ZJR|1|X|U|1459
2ZJR|1|X|G|1460
*
2ZJR|1|X|U|1481
2ZJR|1|X|U|1482
*
2ZJR|1|X|G|1541
2ZJR|1|X|G|1542
2ZJR|1|X|G|1543
2ZJR|1|X|A|1544
2ZJR|1|X|G|1545
*
2ZJR|1|X|C|1558
2ZJR|1|X|G|1559
2ZJR|1|X|A|1560
2ZJR|1|X|A|1561
2ZJR|1|X|G|1562
2ZJR|1|X|U|1563

Current chains

Chain X

ribosomal 23S RNA

Nearby chains