J4_2ZUF_001

3D structure

PDB id

2ZUF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pyrococcus horikoshii arginyl-tRNA synthetase complexed with tRNA(Arg)

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GUAG*CGG*CAGGUCC*GC

Length

16 nucleotides

Bulged bases

2ZUF|1|B|U|908, 2ZUF|1|B|U|947, 2ZUF|1|B|C|948

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2ZUF_001 not in the Motif Atlas

Homologous match to J4_2ZUE_001

Geometric discrepancy: 0.0939

The information below is about J4_2ZUE_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

2ZUF|1|B|G|907
2ZUF|1|B|U|908
2ZUF|1|B|A|909
2ZUF|1|B|G|910
*
2ZUF|1|B|C|925
2ZUF|1|B|G|926
2ZUF|1|B|G|927
*
2ZUF|1|B|C|943
2ZUF|1|B|A|944
2ZUF|1|B|G|945
2ZUF|1|B|G|946
2ZUF|1|B|U|947
2ZUF|1|B|C|948
2ZUF|1|B|C|949
*
2ZUF|1|B|G|965
2ZUF|1|B|C|966

Current chains

Chain B

tRNA-Arg

Nearby chains

Chain A

Arginyl-tRNA synthetase