J4_3A2K_002

3D structure

PDB id

3A2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of TilS complexed with tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UUAG*CAG*CCGGCCG*CA

Length

16 nucleotides

Bulged bases

3A2K|1|D|U|8, 3A2K|1|D|C|48, 3A2K|1|D|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3A2K_002 not in the Motif Atlas

Homologous match to J4_1F7U_001

Geometric discrepancy: 0.3322

The information below is about J4_1F7U_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

3A2K|1|D|U|7
3A2K|1|D|U|8
3A2K|1|D|A|9
3A2K|1|D|G|10
*
3A2K|1|D|C|26
3A2K|1|D|A|27
3A2K|1|D|G|28
*
3A2K|1|D|C|44
3A2K|1|D|C|45
3A2K|1|D|G|46
3A2K|1|D|G|47
3A2K|1|D|C|48
3A2K|1|D|C|49
3A2K|1|D|G|50
*
3A2K|1|D|C|66
3A2K|1|D|A|67

Current chains

Chain D

bacterial tRNA

Nearby chains

Chain A

tRNA(Ile)-lysidine synthase

Chain B

tRNA(Ile)-lysidine synthase