J4_3CCJ_010

3D structure

PDB id

3CCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAC*GG*CACG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CCJ_010 not in the Motif Atlas

Homologous match to J4_4V9F_010

Geometric discrepancy: 0.1384

The information below is about J4_4V9F_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_28473.1

Basepair signature

cWW-F-F-F-cWW-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

3CCJ|1|0|G|2679
3CCJ|1|0|A|2680
3CCJ|1|0|A|2681
3CCJ|1|0|C|2682
*
3CCJ|1|0|G|2712
3CCJ|1|0|G|2713
*
3CCJ|1|0|C|2767
3CCJ|1|0|A|2768
3CCJ|1|0|C|2769
3CCJ|1|0|G|2770
*
3CCJ|1|0|C|2804
3CCJ|1|0|A|2805
3CCJ|1|0|C|2806

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P

Chain K

50S ribosomal protein L14P