J4_3CD6_010
3D structure
- PDB id
- 3CD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- GAAC*GG*CACG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3CD6_010 not in the Motif Atlas
- Homologous match to J4_4V9F_010
- Geometric discrepancy: 0.128
- The information below is about J4_4V9F_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_28473.1
- Basepair signature
- cWW-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
3CD6|1|0|G|2679
3CD6|1|0|A|2680
3CD6|1|0|A|2681
3CD6|1|0|C|2682
*
3CD6|1|0|G|2712
3CD6|1|0|G|2713
*
3CD6|1|0|C|2767
3CD6|1|0|A|2768
3CD6|1|0|C|2769
3CD6|1|0|G|2770
*
3CD6|1|0|C|2804
3CD6|1|0|A|2805
3CD6|1|0|C|2806
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain J
- 50S ribosomal protein L13P
- Chain K
- 50S ribosomal protein L14P
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