J4_3CF5_004

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUUC*GGAAAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

3CF5|1|X|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CF5_004 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.0854

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

3CF5|1|X|G|1323
3CF5|1|X|G|1324
3CF5|1|X|U|1325
3CF5|1|X|U|1326
3CF5|1|X|C|1327
*
3CF5|1|X|G|1351
3CF5|1|X|G|1352
3CF5|1|X|A|1353
3CF5|1|X|A|1354
3CF5|1|X|A|1355
3CF5|1|X|G|1356
*
3CF5|1|X|C|1417
3CF5|1|X|C|1418
*
3CF5|1|X|G|1613
3CF5|1|X|C|1614
3CF5|1|X|C|1615
3CF5|1|X|C|1616
3CF5|1|X|G|1617
3CF5|1|X|U|1618
3CF5|1|X|A|1619
3CF5|1|X|C|1620

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain Q

50S RIBOSOMAL PROTEIN L23

Chain V

50S RIBOSOMAL PROTEIN L29