J4_3CF5_006

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUG*UU*GGGAG*CGAAGU

Length

16 nucleotides

Bulged bases

3CF5|1|X|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CF5_006 not in the Motif Atlas

Homologous match to J4_7A0S_007

Geometric discrepancy: 0.1243

The information below is about J4_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_91813.1

Basepair signature

cWW-cWW-F-tSH-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

3CF5|1|X|A|1458
3CF5|1|X|U|1459
3CF5|1|X|G|1460
*
3CF5|1|X|U|1481
3CF5|1|X|U|1482
*
3CF5|1|X|G|1541
3CF5|1|X|G|1542
3CF5|1|X|G|1543
3CF5|1|X|A|1544
3CF5|1|X|G|1545
*
3CF5|1|X|C|1558
3CF5|1|X|G|1559
3CF5|1|X|A|1560
3CF5|1|X|A|1561
3CF5|1|X|G|1562
3CF5|1|X|U|1563

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains