J4_3CMA_002

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

ACGAAG*CGUG*CAG*CGUACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CMA_002 not in the Motif Atlas

Homologous match to J4_4V9F_002

Geometric discrepancy: 0.0443

The information below is about J4_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_11418.1

Basepair signature

cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

3CMA|1|0|A|302
3CMA|1|0|C|303
3CMA|1|0|G|304
3CMA|1|0|A|305
3CMA|1|0|A|306
3CMA|1|0|G|307
*
3CMA|1|0|C|323
3CMA|1|0|G|324
3CMA|1|0|U|325
3CMA|1|0|G|326
*
3CMA|1|0|C|330
3CMA|1|0|A|331
3CMA|1|0|G|332
*
3CMA|1|0|C|344
3CMA|1|0|G|345
3CMA|1|0|U|346
3CMA|1|0|A|347
3CMA|1|0|C|348
3CMA|1|0|U|349

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P