J4_3CPW_002

3D structure

PDB id

3CPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the antibiotic LINEZOLID bound to the large ribosomal subunit of HALOARCULA MARISMORTUI

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

ACGAAG*CGUG*CAG*CGUACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CPW_002 not in the Motif Atlas

Homologous match to J4_4V9F_002

Geometric discrepancy: 0.028

The information below is about J4_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_11418.1

Basepair signature

cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

3CPW|1|0|A|302
3CPW|1|0|C|303
3CPW|1|0|G|304
3CPW|1|0|A|305
3CPW|1|0|A|306
3CPW|1|0|G|307
*
3CPW|1|0|C|323
3CPW|1|0|G|324
3CPW|1|0|U|325
3CPW|1|0|G|326
*
3CPW|1|0|C|330
3CPW|1|0|A|331
3CPW|1|0|G|332
*
3CPW|1|0|C|344
3CPW|1|0|G|345
3CPW|1|0|U|346
3CPW|1|0|A|347
3CPW|1|0|C|348
3CPW|1|0|U|349

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain S

50S ribosomal protein L24P