J4_3CXC_010

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAC*GG*CACG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CXC_010 not in the Motif Atlas

Homologous match to J4_4V9F_010

Geometric discrepancy: 0.1305

The information below is about J4_4V9F_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_28473.1

Basepair signature

cWW-F-F-F-cWW-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

3CXC|1|0|G|2679
3CXC|1|0|A|2680
3CXC|1|0|A|2681
3CXC|1|0|C|2682
*
3CXC|1|0|G|2712
3CXC|1|0|G|2713
*
3CXC|1|0|C|2767
3CXC|1|0|A|2768
3CXC|1|0|C|2769
3CXC|1|0|G|2770
*
3CXC|1|0|C|2804
3CXC|1|0|A|2805
3CXC|1|0|C|2806

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain I

RIBOSOMAL PROTEIN L13

Chain J

RIBOSOMAL PROTEIN L14