J4_3G4S_002

3D structure

PDB id

3G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Tiamulin bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

ACGAAG*CGUG*CAG*CGUACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3G4S_002 not in the Motif Atlas

Homologous match to J4_4V9F_002

Geometric discrepancy: 0.0772

The information below is about J4_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_11418.1

Basepair signature

cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

3G4S|1|0|A|302
3G4S|1|0|C|303
3G4S|1|0|G|304
3G4S|1|0|A|305
3G4S|1|0|A|306
3G4S|1|0|G|307
*
3G4S|1|0|C|323
3G4S|1|0|G|324
3G4S|1|0|U|325
3G4S|1|0|G|326
*
3G4S|1|0|C|330
3G4S|1|0|A|331
3G4S|1|0|G|332
*
3G4S|1|0|C|344
3G4S|1|0|G|345
3G4S|1|0|U|346
3G4S|1|0|A|347
3G4S|1|0|C|348
3G4S|1|0|U|349

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P