J4_3I55_002

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

ACGAAG*CGUG*CAG*CGUACU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3I55_002 not in the Motif Atlas

Homologous match to J4_4V9F_002

Geometric discrepancy: 0.0482

The information below is about J4_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_11418.1

Basepair signature

cWW-F-F-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

3I55|1|0|A|302
3I55|1|0|C|303
3I55|1|0|G|304
3I55|1|0|A|305
3I55|1|0|A|306
3I55|1|0|G|307
*
3I55|1|0|C|323
3I55|1|0|G|324
3I55|1|0|U|325
3I55|1|0|G|326
*
3I55|1|0|C|330
3I55|1|0|A|331
3I55|1|0|G|332
*
3I55|1|0|C|344
3I55|1|0|G|345
3I55|1|0|U|346
3I55|1|0|A|347
3I55|1|0|C|348
3I55|1|0|U|349

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P