Loop J4_3IYR

3D structure

PDB id: 3IYR (explore in PDB, NAKB, or RNA 3D Hub)
Description: tmRNA-SmpB: a journey to the center of the bacterial ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 13 Å

Loop

Sequence: CCGAGGUGCGGGUGGCCUCGUAAAAACCCGCAACGGCAUAACUGCCAACACCAACUACGCUCU*ACCU*GGGACACAAACCCGGCUAGC*GCGAAGCUUGAAGGGGGCUCGCUCCUGGCCGCCCGUCCGCGGGCCAAGCCAGGAGGACACGCGAAACGCGGACUACG
Length: 164 nucleotides
Bulged bases: 3IYR|1|A|U|68, 3IYR|1|A|A|69, 3IYR|1|A|A|71, 3IYR|1|A|A|72, 3IYR|1|A|A|79, 3IYR|1|A|A|80, 3IYR|1|A|C|81, 3IYR|1|A|G|82, 3IYR|1|A|G|83, 3IYR|1|A|C|84, 3IYR|1|A|A|85, 3IYR|1|A|U|86, 3IYR|1|A|A|87, 3IYR|1|A|A|88, 3IYR|1|A|C|89, 3IYR|1|A|U|90, 3IYR|1|A|A|95, 3IYR|1|A|C|96, 3IYR|1|A|A|97, 3IYR|1|A|A|101, 3IYR|1|A|C|107, 3IYR|1|A|A|171, 3IYR|1|A|C|172, 3IYR|1|A|A|173, 3IYR|1|A|C|174, 3IYR|1|A|A|175, 3IYR|1|A|A|176, 3IYR|1|A|A|177, 3IYR|1|A|C|178, 3IYR|1|A|U|184, 3IYR|1|A|G|215, 3IYR|1|A|G|218, 3IYR|1|A|C|219, 3IYR|1|A|U|220, 3IYR|1|A|C|246, 3IYR|1|A|A|259, 3IYR|1|A|A|271, 3IYR|1|A|C|272, 3IYR|1|A|G|273, 3IYR|1|A|C|274, 3IYR|1|A|G|275, 3IYR|1|A|U|286, 3IYR|1|A|A|287, 3IYR|1|A|C|288
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3IYR|1|A|C|48
3IYR|1|A|C|49
3IYR|1|A|G|50
3IYR|1|A|A|51
3IYR|1|A|G|52
3IYR|1|A|G|53
3IYR|1|A|U|54
3IYR|1|A|G|55
3IYR|1|A|C|56
3IYR|1|A|G|57
3IYR|1|A|G|58
3IYR|1|A|G|59
3IYR|1|A|U|60
3IYR|1|A|G|61
3IYR|1|A|G|62
3IYR|1|A|C|63
3IYR|1|A|C|64
3IYR|1|A|U|65
3IYR|1|A|C|66
3IYR|1|A|G|67
3IYR|1|A|U|68
3IYR|1|A|A|69
3IYR|1|A|A|70
3IYR|1|A|A|71
3IYR|1|A|A|72
3IYR|1|A|A|73
3IYR|1|A|C|74
3IYR|1|A|C|75
3IYR|1|A|C|76
3IYR|1|A|G|77
3IYR|1|A|C|78
3IYR|1|A|A|79
3IYR|1|A|A|80
3IYR|1|A|C|81
3IYR|1|A|G|82
3IYR|1|A|G|83
3IYR|1|A|C|84
3IYR|1|A|A|85
3IYR|1|A|U|86
3IYR|1|A|A|87
3IYR|1|A|A|88
3IYR|1|A|C|89
3IYR|1|A|U|90
3IYR|1|A|G|91
3IYR|1|A|C|92
3IYR|1|A|C|93
3IYR|1|A|A|94
3IYR|1|A|A|95
3IYR|1|A|C|96
3IYR|1|A|A|97
3IYR|1|A|C|98
3IYR|1|A|C|99
3IYR|1|A|A|100
3IYR|1|A|A|101
3IYR|1|A|C|102
3IYR|1|A|U|103
3IYR|1|A|A|104
3IYR|1|A|C|105
3IYR|1|A|G|106
3IYR|1|A|C|107
3IYR|1|A|U|108
3IYR|1|A|C|109
3IYR|1|A|U|110
*
3IYR|1|A|A|129
3IYR|1|A|C|130
3IYR|1|A|C|131
3IYR|1|A|U|132
*
3IYR|1|A|G|168
3IYR|1|A|G|169
3IYR|1|A|G|170
3IYR|1|A|A|171
3IYR|1|A|C|172
3IYR|1|A|A|173
3IYR|1|A|C|174
3IYR|1|A|A|175
3IYR|1|A|A|176
3IYR|1|A|A|177
3IYR|1|A|C|178
3IYR|1|A|C|179
3IYR|1|A|C|180
3IYR|1|A|G|181
3IYR|1|A|G|182
3IYR|1|A|C|183
3IYR|1|A|U|184
3IYR|1|A|A|185
3IYR|1|A|G|186
3IYR|1|A|C|187
*
3IYR|1|A|G|213
3IYR|1|A|C|214
3IYR|1|A|G|215
3IYR|1|A|A|216
3IYR|1|A|A|217
3IYR|1|A|G|218
3IYR|1|A|C|219
3IYR|1|A|U|220
3IYR|1|A|U|221
3IYR|1|A|G|222
3IYR|1|A|A|223
3IYR|1|A|A|224
3IYR|1|A|G|225
3IYR|1|A|G|226
3IYR|1|A|G|227
3IYR|1|A|G|228
3IYR|1|A|G|229
3IYR|1|A|C|230
3IYR|1|A|U|231
3IYR|1|A|C|232
3IYR|1|A|G|233
3IYR|1|A|C|234
3IYR|1|A|U|235
3IYR|1|A|C|236
3IYR|1|A|C|237
3IYR|1|A|U|238
3IYR|1|A|G|239
3IYR|1|A|G|240
3IYR|1|A|C|241
3IYR|1|A|C|242
3IYR|1|A|G|243
3IYR|1|A|C|244
3IYR|1|A|C|245
3IYR|1|A|C|246
3IYR|1|A|G|247
3IYR|1|A|U|248
3IYR|1|A|C|249
3IYR|1|A|C|250
3IYR|1|A|G|251
3IYR|1|A|C|252
3IYR|1|A|G|253
3IYR|1|A|G|254
3IYR|1|A|G|255
3IYR|1|A|C|256
3IYR|1|A|C|257
3IYR|1|A|A|258
3IYR|1|A|A|259
3IYR|1|A|G|260
3IYR|1|A|C|261
3IYR|1|A|C|262
3IYR|1|A|A|263
3IYR|1|A|G|264
3IYR|1|A|G|265
3IYR|1|A|A|266
3IYR|1|A|G|267
3IYR|1|A|G|268
3IYR|1|A|A|269
3IYR|1|A|C|270
3IYR|1|A|A|271
3IYR|1|A|C|272
3IYR|1|A|G|273
3IYR|1|A|C|274
3IYR|1|A|G|275
3IYR|1|A|A|276
3IYR|1|A|A|277
3IYR|1|A|A|278
3IYR|1|A|C|279
3IYR|1|A|G|280
3IYR|1|A|C|281
3IYR|1|A|G|282
3IYR|1|A|G|283
3IYR|1|A|A|284
3IYR|1|A|C|285
3IYR|1|A|U|286
3IYR|1|A|A|287
3IYR|1|A|C|288
3IYR|1|A|G|289

Current chains

Chain A: tmRNA

Nearby chains

Chain B: SsrA-binding protein

J4_3IYR_001