J4_3J5L_009

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

3J5L|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J5L_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.0631

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

3J5L|1|A|C|1833
3J5L|1|A|U|1834
3J5L|1|A|G|1835
*
3J5L|1|A|C|1905
3J5L|1|A|G|1906
*
3J5L|1|A|C|1924
3J5L|1|A|C|1925
3J5L|1|A|U|1926
3J5L|1|A|A|1927
3J5L|1|A|A|1928
3J5L|1|A|G|1929
3J5L|1|A|G|1930
3J5L|1|A|U|1931
3J5L|1|A|A|1932
3J5L|1|A|G|1933
*
3J5L|1|A|C|1967
3J5L|1|A|G|1968
3J5L|1|A|A|1969
3J5L|1|A|A|1970
3J5L|1|A|U|1971
3J5L|1|A|G|1972

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain C

50S ribosomal protein L2