3D structure

PDB id
3J6B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast mitochondrial large ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UAAUAA*UAUAA*UAUAGUAAGUAC*GGAAAG
Length
29 nucleotides
Bulged bases
3J6B|1|A|U|69, 3J6B|1|A|U|93, 3J6B|1|A|U|383, 3J6B|1|A|A|384, 3J6B|1|A|U|386
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J6B|1|A|U|66
3J6B|1|A|A|67
3J6B|1|A|A|68
3J6B|1|A|U|69
3J6B|1|A|A|70
3J6B|1|A|A|71
*
3J6B|1|A|U|91
3J6B|1|A|A|92
3J6B|1|A|U|93
3J6B|1|A|A|94
3J6B|1|A|A|95
*
3J6B|1|A|U|381
3J6B|1|A|A|382
3J6B|1|A|U|383
3J6B|1|A|A|384
3J6B|1|A|G|385
3J6B|1|A|U|386
3J6B|1|A|A|387
3J6B|1|A|A|388
3J6B|1|A|G|389
3J6B|1|A|U|390
3J6B|1|A|A|391
3J6B|1|A|C|392
*
3J6B|1|A|G|399
3J6B|1|A|G|400
3J6B|1|A|A|401
3J6B|1|A|A|402
3J6B|1|A|A|403
3J6B|1|A|G|404

Current chains

Chain A
21S ribosomal RNA

Nearby chains

Chain 3
54S ribosomal protein L27, mitochondrial
Chain 8
54S ribosomal protein L13, mitochondrial
Chain D
54S ribosomal protein YmL6, mitochondrial
Chain P
54S ribosomal protein L41, mitochondrial
Chain Q
54S ribosomal protein L40, mitochondrial
Chain Y
54S ribosomal protein L34, mitochondrial

Coloring options:

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